PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo22G0040700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 177aa    MW: 19790.9 Da    PI: 9.9507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo22G0040700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-102370454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     ++  rE+ RRd++N++f eL  +l +    + +K++Ka+iL  A++ + +L
  Spipo22G0040700 23 TKACREKMRRDKLNDRFLELSYILDPG---RPPKVDKAAILSDATRRLAQL 70
                     6789********************997...89*************988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.4491970IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-72075No hitNo description
SuperFamilySSF474592.62E-122089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-82370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-112492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-62576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
FSLGFLSDDP CRNRAGSPAK PGTKACREKM RRDKLNDRFL ELSYILDPGR PPKVDKAAIL  60
SDATRRLAQL RLEAEKLRES NEALQSTIKV LKAEKMELRD EKVKLKAEKD RMEQVLNDAG  120
MPPRAPPFVP HHPAAYVACT KNVPFASYPP PLAMWQWLPP TAVDTSQDHV LRPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256783.12e-66PREDICTED: transcription factor ILR3-like
SwissprotQ9FH373e-56ILR3_ARATH; Transcription factor ILR3
TrEMBLW1PP384e-65W1PP38_AMBTC; Uncharacterized protein
STRINGBRADI2G23520.11e-59(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-52bHLH family protein